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jsq R package?
Posted: Tue Oct 05, 2021 2:32 pm
by kcipora
Dear Jonathon et al.,
I was wondering whether there is a chance that the jsq R package will be released (or that it is already available, but I cannot find it). It would be of a great help for our current project, which we want to make fully reproducible via R script.
The JAMOVI tool seems to be the most reasonable method to get a nice Bayesian correlation matrix together with credible intervals.
Any advice greatly appreciated!
Cheers,
Krzysztof
Re: jsq R package?
Posted: Tue Oct 05, 2021 3:39 pm
by MAgojam
Hi, Krzysztof.
Didn't think about checking it out here:
https://github.com/jonathon-love/jsq
Cheers,
Maurizio
Re: jsq R package?
Posted: Tue Oct 05, 2021 3:56 pm
by kcipora
Hi Maurizio,
My bad!
After finding the repo before I, for some unexplained reasons, thought it was the source code of the jamovi library rather than the actual R package... As if the "R" folder name was not suggestive enough...
Sorry and thanks for help!
Cheers,
Krzysztof
Re: jsq R package?
Posted: Tue Jun 28, 2022 10:22 am
by jbuczny
Hi there!
While is try to install the package form the repository: remotes::install_github('jonathon-love/jsq'), I receive the following feedback:
---
ERROR: dependency ‘conting’ is not available for package ‘jsq’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/jsq’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/qd/wsq7vs7j3tl4g6vcqkzsshn00000gn/T//Rtmpnqf7WX/file14912e9d01df/jsq_1.2.0.tar.gz’ had non-zero exit status
---
The conting package seems retractracted from CRAN. Manual installation does not help. Any solution? I want to run Bayesian ANCOVA in RStudio.
Thanks!
Re: jsq R package?
Posted: Wed Jun 29, 2022 11:30 pm
by jonathon
manual installation should work ...
jonathon
Re: jsq R package?
Posted: Wed Jun 29, 2022 11:37 pm
by jbuczny
I tried to manually install the dependent package, but the installation was not successful.
Do you have any suggestions, Jonathon, how to bypass this?
J
Re: jsq R package?
Posted: Wed Jun 29, 2022 11:38 pm
by jonathon
let us figure out why the installation of conting was not successful ... what error did you receive?
jonathon
Re: jsq R package?
Posted: Wed Jun 29, 2022 11:47 pm
by jbuczny
(1) Downloaded form https://www.jstatsoft.org/article/view/v058i07
> install.packages("~/Downloads/conting_1.3.tar.gz", repos = NULL, type = "source")
ERROR: dependencies ‘BMS’, ‘tseries’ are not available for package ‘conting’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/conting’
Warning in install.packages :
installation of package ‘/Users/jbuczny/Downloads/conting_1.3.tar.gz’ had non-zero exit status
(2) Downloaded from https://cran.r-project.org/src/contrib/Archive/conting/
> install.packages("~/Downloads/conting_1.7.tar.gz", repos = NULL, type = "source")
ERROR: dependencies ‘BMS’, ‘tseries’ are not available for package ‘conting’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/conting’
Warning in install.packages :
installation of package ‘/Users/jbuczny/Downloads/conting_1.7.tar.gz’ had non-zero exit status
RStudio 2022.02.3 Build 492, R version 4.2.0, mac OS 11.6.7
Re: jsq R package?
Posted: Thu Jun 30, 2022 12:07 am
by jonathon
as per the error, you just need to install the BMS and tseries packages first.
cheers
jonathon
Re: jsq R package?
Posted: Thu Jun 30, 2022 9:11 am
by jbuczny
Thank you.
Manual installation of BMS was necessary. All in all, jsq is successfully installed now.
J