Cholmod 'out of memory' error in mixed model linear regression
Posted: Sat Dec 16, 2023 11:58 am
Hi,
I am running a mixed model linear regression in gamlj 2.6.6 with 5 factors and a cluster variable with around 100 different expressions.
When I let it run on my Computer (16GB RAM I get an error in the means of Cholmod error 'out of memory' at file ../Core/cholmod_memory.c, line 147. When I use another Computer with just 8GB RAM it says cannot allocate vector of 9.8 GB. I havent tried more RAM yet, because I wanted to post this here first and I'm not sure this issue would be fixed by just shooting more Power at it.
My data is around 36.000 lines. When I use just a fraction (5000 lines), I get a working mixed model and results without any error.
The file is too big to be attached here, bit I could send it via fileshare if needed.
Any help would be very much appreciated
Steffen
I am running a mixed model linear regression in gamlj 2.6.6 with 5 factors and a cluster variable with around 100 different expressions.
When I let it run on my Computer (16GB RAM I get an error in the means of Cholmod error 'out of memory' at file ../Core/cholmod_memory.c, line 147. When I use another Computer with just 8GB RAM it says cannot allocate vector of 9.8 GB. I havent tried more RAM yet, because I wanted to post this here first and I'm not sure this issue would be fixed by just shooting more Power at it.
My data is around 36.000 lines. When I use just a fraction (5000 lines), I get a working mixed model and results without any error.
The file is too big to be attached here, bit I could send it via fileshare if needed.
Any help would be very much appreciated
Steffen